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May relate to blind urges; basic cellular processes in your body; fundamental levels of awareness – i.e. being barely aware of something, but acting instinctively, or it could relate to sperm or ovum or reproduction. This might also relate to feeling your way instinctively in what you are doing. Amoeba’s engulf their prey, and if you know this it might figure in your dream in some way.
Useful Questions and Hints:
What am I sensing from my body that links with the dream action?
Are there clues in the theme and drama of my dream as to what part in my life the amoeba is playing?
If I imagine myself as the amoeba what do I feel or experience? For help doing this see Processing Dreams.